BioAutoML: Automated Feature Engineering and Metalearning for Classification of Biological Sequences

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Installing dependencies and package

Conda - Terminal

Installing BioAutoML using miniconda, e.g.:

$ git clone https://github.com/Bonidia/BioAutoML.git BioAutoML

$ cd BioAutoML

$ git submodule init

$ git submodule update

1 - Install Miniconda:

See documentation: https://docs.conda.io/en/latest/miniconda.html

$ wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh

$ chmod +x Miniconda3-latest-Linux-x86_64.sh

$ ./Miniconda3-latest-Linux-x86_64.sh

$ export PATH=~/miniconda3/bin:$PATH

2 - Create environment:

conda env create -f BioAutoML-env.yml -n bioautoml

3 - Activate environment:

conda activate bioautoml

4 - You can deactivate the environment, using:

conda deactivate